| Scientific Name | Local Name | Aquarium Demand met by | Occurrence | Other Name |
|---|---|---|---|---|
| Abudefduf sordidus | Blackspot sergeant | based mainly on capture | native | Blackspot sergeant |
| Abudefduf vaigiensis | based mainly on capture | native | Indo-Pacific sergeant | |
| Acanthurus nigricans | Papakol | based mainly on capture | native | Whitecheek surgeonfish |
| Aeoliscus strigatus | Isdang sikwan | based mainly on capture | native | Razorfish |
| Amblycirrhitus bimacula | based mainly on capture | native | Twospot hawkfish | |
| Amblyglyphidodon curacao | based mainly on capture | native | Staghorn damselfish | |
| Amphiprion clarkii | based mainly on capture | native | Yellowtail clownfish | |
| Amphiprion frenatus | based mainly on capture | native | Tomato clownfish | |
| Amphiprion polymnus | based mainly on capture | native | Saddleback clownfish | |
| Amphiprion sandaracinos | based mainly on capture | native | Yellow clownfish | |
| Anabas testudineus | Liwalo | based mainly on breeding | introduced | Climbing perch |
| Anomalops katoptron | based mainly on capture | native | Splitfin flashlightfish | |
| Antennatus coccineus | based mainly on capture | native | Scarlet frogfish | |
| Antennatus nummifer | native | Spotfin frogfish | ||
| Aplocheilus panchax | Killie | based mainly on breeding | introduced | Blue panchax |
| Apogon coccineus | Dangat | based mainly on capture | native | Ruby cardinalfish |
| Apolemichthys trimaculatus | based mainly on capture | native | Threespot angelfish | |
| Arothron hispidus | Butete | based mainly on capture | native | White-spotted puffer |
| Arothron meleagris | Butete | based mainly on capture | native | Guineafowl puffer |
| Aspidontus taeniatus | based mainly on capture | native | False cleanerfish | |
| Balistapus undulatus | Orange striped triggerfish | based mainly on capture | native | Orange-lined triggerfish |
| Barbodes binotatus | Pait | based mainly on capture | native | Spotted barb |
| Bodianus anthioides | based mainly on capture | native | Lyretail hogfish | |
| Bodianus axillaris | based mainly on capture | native | Axilspot hogfish | |
| Bodianus bilunulatus | Bungat | based mainly on capture | native | Tarry hogfish |
| Bodianus bimaculatus | based mainly on capture | native | Twospot hogfish | |
| Bodianus diana | based mainly on capture | misidentification | Diana's hogfish | |
| Bothus mancus | Dapa | based mainly on capture | native | Flowery flounder |
| Calloplesiops argus | native | |||
| Cantherhines dumerilii | based mainly on capture | native | Whitespotted filefish | |
| Canthigaster janthinoptera | Butete | based mainly on capture | native | Honeycomb toby |
| Canthigaster rivulata | based mainly on capture | native | Brown-lined puffer | |
| Canthigaster solandri | Butete | based mainly on capture | native | Spotted sharpnose |
| Canthigaster valentini | Butete | based mainly on capture | native | Valentin's sharpnose puffer |
| Centropyge bicolor | Boray-boray | based mainly on capture | native | Bicolor angelfish |
| Centropyge bispinosa | Adlo | based mainly on capture | native | Twospined angelfish |
| Centropyge ferrugata | based mainly on capture | native | Rusty angelfish | |
| Centropyge fisheri | Boray-boray | based mainly on capture | native | Orange angelfish |
| Centropyge flavissima | Boray-boray | based mainly on capture | native | Lemonpeel angelfish |
| Centropyge heraldi | Boray-boray | based mainly on capture | native | Yellow angelfish |
| Centropyge nox | based mainly on capture | native | Midnight angelfish | |
| Centropyge tibicen | Adlo | based mainly on capture | native | Keyhole angelfish |
| Centropyge vrolikii | Paro-paro | based mainly on capture | native | Pearlscale angelfish |
| Cetoscarus bicolor | Bicolour parrotfish | based mainly on capture | native | Bicolour parrotfish |
| Chaetodon adiergastos | Bantayan butterflyfish | based mainly on capture | native | Philippine butterflyfish |
| Chaetodon argentatus | Asian butterflyfish | based mainly on capture | native | Asian butterflyfish |
| Chaetodon auriga | Paru-paro | based mainly on capture | native | Threadfin butterflyfish |
| Chaetodon baronessa | Eastern triangular butterflyfish | based mainly on capture | native | Eastern triangular butterflyfish |
| Chaetodon bennetti | Bluelashed butterflyfish | based mainly on capture | native | Bluelashed butterflyfish |
| Chaetodon burgessi | Alibang-bang | based mainly on capture | native | Burgess' butterflyfish |
| Chaetodon citrinellus | Paru-paro | based mainly on capture | native | Speckled butterflyfish |
| Chaetodon collare | Paru-paro | based mainly on capture | native | Redtail butterflyfish |
| Chaetodon ephippium | Paru-paro | based mainly on capture | native | Saddle butterflyfish |
| Chaetodon kleinii | based mainly on capture | native | Sunburst butterflyfish | |
| Chaetodon lineolatus | Lined butterflyfish | based mainly on capture | native | Lined butterflyfish |
| Chaetodon lunula | based mainly on capture | native | Raccoon butterflyfish | |
| Chaetodon melannotus | Blackback butterflyfish | based mainly on capture | native | Blackback butterflyfish |
| Chaetodon mertensii | Atoll butterflyfish | based mainly on capture | native | Atoll butterflyfish |
| Chaetodon meyeri | Paru-paro | based mainly on capture | native | Scrawled butterflyfish |
| Chaetodon octofasciatus | Eightband butterflyfish | based mainly on capture | native | Eightband butterflyfish |
| Chaetodon ornatissimus | Ornate butterflyfish | based mainly on capture | native | Ornate butterflyfish |
| Chaetodon plebeius | Blueblotch butterflyfish | based mainly on capture | native | Blueblotch butterflyfish |
| Chaetodon punctatofasciatus | Paru-paro | based mainly on capture | native | Spotband butterflyfish |
| Chaetodon rafflesii | Alibang-bang | based mainly on capture | native | Latticed butterflyfish |
| Chaetodon reticulatus | Alibang-bang | based mainly on capture | native | Mailed butterflyfish |
| Chaetodon semeion | Alibang-bang | based mainly on capture | native | Dotted butterflyfish |
| Chaetodon speculum | Alibang-bang | based mainly on capture | native | Mirror butterflyfish |
| Chaetodon trifascialis | Alibang-bang | based mainly on capture | native | Chevron butterflyfish |
| Chaetodon trifasciatus | Alibang-bang | based mainly on capture | questionable | Melon butterflyfish |
| Chaetodon ulietensis | Pacific doublesaddle butterflyfish | based mainly on capture | native | Pacific double-saddle butterflyfish |
| Chaetodon unimaculatus | Paru-paro | based mainly on capture | native | Teardrop butterflyfish |
| Chaetodon vagabundus | based mainly on capture | native | Vagabond butterflyfish | |
| Chaetodon xanthurus | Philippine chevron butterflyfish | based mainly on capture | native | Pearlscale butterflyfish |
| Chaetodontoplus melanosoma | Adlo | based mainly on capture | native | Black-velvet angelfish |
| Chaetodontoplus mesoleucus | based mainly on capture | native | Vermiculated angelfish | |
| Cheilinus fasciatus | Mameng | based mainly on capture | native | Redbreasted wrasse |
| Cheilio inermis | Cigar wrasse | based mainly on capture | native | Cigar wrasse |
| Chelmon rostratus | based mainly on capture | native | Copperband butterflyfish | |
| Chlorurus japanensis | Loro | based mainly on capture | native | Palecheek parrotfish |
| Chlorurus sordidus | Daisy parrotfish | based mainly on capture | native | Daisy parrotfish |
| Chromis agilis | based mainly on capture | native | Agile chromis | |
| Chromis atripectoralis | based mainly on capture | native | Black-axil chromis | |
| Chromis ternatensis | based mainly on capture | native | Ternate chromis | |
| Chromis vanderbilti | based mainly on capture | native | Vanderbilt's chromis | |
| Chromis viridis | based mainly on capture | native | Blue green damselfish | |
| Chrysiptera rex | based mainly on capture | native | King demoiselle | |
| Chrysiptera rollandi | based mainly on capture | native | Rolland's demoiselle | |
| Cirrhitichthys aprinus | based mainly on capture | native | Spotted hawkfish | |
| Cirrhitichthys falco | based mainly on capture | native | Dwarf hawkfish | |
| Cirrhitichthys oxycephalus | based mainly on capture | native | Coral hawkfish | |
| Cirrhitus pinnulatus | based mainly on capture | native | Stocky hawkfish | |
| Clarias batrachus | Hitong batukan | based mainly on capture | introduced | Philippine catfish |
| Conger cinereus | Obud | based mainly on capture | native | Longfin African conger |
| Coris aygula | Clown coris | based mainly on capture | native | Clown coris |
| Coris batuensis | native | Batu coris | ||
| Coris pictoides | based mainly on capture | native | Blackstripe coris | |
| Corythoichthys haematopterus | Dagum-dagum | based mainly on capture | native | Messmate pipefish |
| Ctenochaetus tominiensis | Labahita | based mainly on capture | native | Tomini surgeonfish |
| Dascyllus aruanus | based mainly on capture | native | Whitetail dascyllus | |
| Dascyllus melanurus | based mainly on capture | native | Blacktail humbug | |
| Dascyllus reticulatus | Baro-baro | based mainly on capture | native | Reticulate dascyllus |
| Dascyllus trimaculatus | based mainly on capture | native | Threespot dascyllus | |
| Dendrochirus brachypterus | based mainly on capture | native | Shortfin turkeyfish | |
| Dendrochirus zebra | based mainly on capture | native | Zebra turkeyfish | |
| Diodon liturosus | Black-blotched porcupinefish | based mainly on capture | native | Black-blotched porcupinefish |
| Doryrhamphus excisus excisus | Dagum-dagum | based mainly on capture | native | Bluestripe pipefish |
| Echidna nebulosa | Igat | based mainly on capture | native | Starry moray |
| Echidna polyzona | Payangitan | based mainly on capture | native | Barred moray |
| Ecsenius bicolor | based mainly on capture | native | Bicolor blenny | |
| Ecsenius midas | based mainly on capture | native | Persian blenny | |
| Epibulus insidiator | Bungat | based mainly on capture | native | Sling-jaw wrasse |
| Exallias brevis | based mainly on capture | native | Leopard blenny | |
| Fistularia commersonii | based mainly on capture | native | Bluespotted cornetfish | |
| Forcipiger flavissimus | Longnose butterflyfish | based mainly on capture | native | Longnose butterfly fish |
| Forcipiger longirostris | Longnose butterflyfish | based mainly on capture | native | Longnose butterflyfish |
| Gambusia affinis | Isdang canal | based mainly on breeding | introduced | Mosquitofish |
| Genicanthus bellus | Boray-boray | based mainly on capture | native | Ornate angelfish |
| Genicanthus lamarck | based mainly on capture | native | Blackstriped angelfish | |
| Genicanthus melanospilos | based mainly on capture | native | Spotbreast angelfish | |
| Genicanthus semifasciatus | based mainly on capture | native | Japanese swallow | |
| Genicanthus watanabei | based mainly on capture | native | Blackedged angelfish | |
| Gobiodon citrinus | Bia | based mainly on capture | native | Poison goby |
| Gomphosus varius | based mainly on capture | native | Bird wrasse | |
| Grammistes sexlineatus | based mainly on capture | native | Goldenstriped soapfish | |
| Gymnomuraena zebra | Malibanos | based mainly on capture | native | Zebra moray |
| Gymnothorax meleagris | Malibanos | based mainly on capture | native | Turkey moray |
| Halichoeres biocellatus | Redlined wrasse | based mainly on capture | native | Red-lined wrasse |
| Halichoeres hortulanus | Checkerboard wrasse | based mainly on capture | native | Checkerboard wrasse |
| Halichoeres ornatissimus | based mainly on capture | native | Ornamented wrasse | |
| Hemiglyphidodon plagiometopon | based mainly on capture | native | Lagoon damselfish | |
| Hemigymnus melapterus | based mainly on capture | native | Blackeye thicklip | |
| Hemitaurichthys polylepis | Paru-paro | based mainly on capture | native | Pyramid butterflyfish |
| Heniochus acuminatus | based mainly on capture | native | Pennant coralfish | |
| Heniochus chrysostomus | based mainly on capture | native | Threeband pennantfish | |
| Heniochus monoceros | Masked bannerfish | based mainly on capture | native | Masked bannerfish |
| Heniochus varius | Horned bannerfish | based mainly on capture | native | Horned bannerfish |
| Hippichthys heptagonus | Pipefish | native | Belly pipefish | |
| Hippocampus barbouri | based mainly on capture | native | Barbour's seahorse | |
| Hippocampus kuda | Kabayo-kabayohan | based mainly on capture | native | Spotted seahorse |
| Hologymnosus doliatus | based mainly on capture | native | Pastel ringwrasse | |
| Hoplolatilus cuniculus | native | Dusky tilefish | ||
| Hoplolatilus fronticinctus | based mainly on capture | native | Pastel tilefish | |
| Hoplolatilus starcki | native | Stark's tilefish | ||
| Inimicus didactylus | based mainly on capture | native | Bearded ghoul | |
| Koumansetta rainfordi | Bia | native | Old glory | |
| Labroides bicolor | based mainly on capture | native | Bicolor cleaner wrasse | |
| Labroides dimidiatus | based mainly on capture | native | Bluestreak cleaner wrasse | |
| Labroides pectoralis | based mainly on capture | native | Blackspot cleaner wrasse | |
| Lactoria cornuta | Longhorn cowfish | based mainly on capture | native | Longhorn cowfish |
| Lepidozygus tapeinosoma | based mainly on capture | native | Fusilier damselfish | |
| Lepomis macrochirus | Sunfish | based mainly on capture | introduced | Bluegill |
| Macropharyngodon meleagris | based mainly on capture | native | Blackspotted wrasse | |
| Macropharyngodon negrosensis | Buntogon | based mainly on capture | native | Yellowspotted wrasse |
| Malacanthus brevirostris | based mainly on capture | native | Quakerfish | |
| Mayaheros urophthalmus | based mainly on breeding | introduced | Mexican mojarra | |
| Meiacanthus atrodorsalis | based mainly on capture | native | Forktail blenny | |
| Meiacanthus grammistes | based mainly on capture | native | Striped poison-fang blenny | |
| Melichthys vidua | Papakol | based mainly on capture | native | Pinktail triggerfish |
| Misgurnus anguillicaudatus | Dojo | based mainly on capture | introduced | Pond loach |
| Monodactylus argenteus | Silver moony | based mainly on capture | native | Silver moony |
| Myripristis berndti | Baga-baga | based mainly on capture | native | Blotcheye soldierfish |
| Myripristis kuntee | Baga-baga | based mainly on capture | native | Shoulderbar soldierfish |
| Myripristis murdjan | Baga-baga | based mainly on capture | native | Pinecone soldierfish |
| Naso brachycentron | Humpback unicornfish | based mainly on capture | native | Humpback unicornfish |
| Naso brevirostris | Spotted unicornfish | based mainly on capture | native | Spotted unicornfish |
| Naso vlamingii | Bignose unicornfish | based mainly on capture | native | Bignose unicornfish |
| Nemateleotris decora | based mainly on capture | native | Elegant firefish | |
| Nemateleotris magnifica | based mainly on capture | native | Fire goby | |
| Neoglyphidodon oxyodon | based mainly on capture | native | Bluestreak damselfish | |
| Neoniphon sammara | Baga-baga | native | Sammara squirrelfish | |
| Novaculichthys taeniourus | Mameng | based mainly on capture | native | Rockmover wrasse |
| Osphronemus goramy | Goramy | based mainly on breeding | introduced | Giant gourami |
| Ostorhinchus hartzfeldii | native | Hartzfeld's cardinalfish | ||
| Ostracion cubicus | Baka baka | based mainly on capture | native | Yellow boxfish |
| Ostracion meleagris | Kaban-kaban | based mainly on capture | native | Whitespotted boxfish |
| Oxycheilinus bimaculatus | based mainly on capture | native | Two-spot wrasse | |
| Oxycheilinus unifasciatus | based mainly on capture | native | Ringtail maori wrasse | |
| Oxycirrhites typus | based mainly on capture | native | Longnose hawkfish | |
| Oxyeleotris marmorata | Bia | based mainly on capture | native | Marble goby |
| Oxymonacanthus longirostris | Pakol | based mainly on capture | native | Harlequin filefish |
| Paracanthurus hepatus | based mainly on capture | native | Palette surgeonfish | |
| Paracentropyge multifasciata | Paro-paro | based mainly on capture | native | Barred angelfish |
| Paracirrhites arcatus | based mainly on capture | native | Arc-eye hawkfish | |
| Paracirrhites forsteri | based mainly on capture | native | Blackside hawkfish | |
| Parupeneus barberinoides | Bicolor goatfish | based mainly on capture | native | Bicolor goatfish |
| Parupeneus barberinus | Dash-and-dot goatfish | based mainly on capture | native | Dash-and-dot goatfish |
| Parupeneus cyclostomus | Goldsaddle goatfish | based mainly on capture | native | Gold-saddle goatfish |
| Parupeneus multifasciatus | based mainly on capture | native | Manybar goatfish | |
| Parupeneus pleurostigma | Sidespot goatfish | based mainly on capture | native | Sidespot goatfish |
| Photoblepharon palpebratum | based mainly on capture | native | Eyelight fish | |
| Pictichromis porphyrea | based mainly on capture | native | Magenta dottyback | |
| Plagiotremus rhinorhynchos | based mainly on capture | native | Bluestriped fangblenny | |
| Plagiotremus tapeinosoma | based mainly on capture | native | Piano fangblenny | |
| Platax orbicularis | Batfish | based mainly on capture | native | Orbicular batfish |
| Platax pinnatus | Bayang | based mainly on capture | native | Dusky batfish |
| Platax teira | Darapugan | based mainly on breeding | native | Longfin batfish |
| Plectorhinchus albovittatus | Labian | based mainly on capture | native | Two-striped sweetlips |
| Plectorhinchus lineatus | Alatan | based mainly on capture | native | Yellowbanded sweetlips |
| Plectorhinchus picus | native | Painted sweetlip | ||
| Plectroglyphidodon imparipennis | based mainly on capture | native | Brighteye damselfish | |
| Plectroglyphidodon johnstonianus | based mainly on capture | native | Johnston Island damsel | |
| Pomacanthus annularis | based mainly on capture | native | Bluering angelfish | |
| Pomacanthus imperator | based mainly on capture | native | Emperor angelfish | |
| Pomacanthus navarchus | Paru-parung dagat | based mainly on capture | native | Bluegirdled angelfish |
| Pomacanthus semicirculatus | based mainly on capture | native | Semicircle angelfish | |
| Pomacanthus sexstriatus | based mainly on capture | native | Sixbar angelfish | |
| Pomacanthus xanthometopon | Paro-paro | based mainly on capture | native | Yellowface angelfish |
| Pomacentrus coelestis | based mainly on capture | native | Neon damselfish | |
| Pomacentrus moluccensis | based mainly on capture | native | Lemon damsel | |
| Pomacentrus nagasakiensis | based mainly on capture | native | Nagasaki damsel | |
| Pomacentrus philippinus | based mainly on capture | native | Philippine damsel | |
| Premnas biaculeatus | based mainly on capture | native | Spinecheek anemonefish | |
| Priacanthus hamrur | based mainly on capture | native | Moontail bullseye | |
| Pristiapogon kallopterus | Dangat | based mainly on capture | native | Iridescent cardinalfish |
| Pseudanthias dispar | based mainly on capture | native | Peach fairy basslet | |
| Pseudanthias luzonensis | native | Yellowlined anthias | ||
| Pseudanthias squamipinnis | based mainly on capture | native | Sea goldie | |
| Pseudanthias tuka | native | Yellowstriped fairy basslet | ||
| Pseudocheilinus evanidus | based mainly on capture | native | Striated wrasse | |
| Pseudocheilinus hexataenia | Mameng | based mainly on capture | native | Sixline wrasse |
| Pseudocheilinus octotaenia | based mainly on capture | native | Eight-lined wrasse | |
| Pterois antennata | based mainly on capture | native | Broadbarred firefish | |
| Pterois radiata | based mainly on capture | native | Radial firefish | |
| Pterois volitans | based mainly on capture | native | Red lionfish | |
| Pygoplites diacanthus | based mainly on capture | native | Regal angelfish | |
| Rasbora argyrotaenia | based mainly on breeding | native | Silver rasbora | |
| Rasbora borapetensis | Red tail rasbora | based mainly on breeding | native | Blackline rasbora |
| Rasbora lateristriata | based mainly on breeding | native | Yellow rasbora | |
| Rhinecanthus aculeatus | Blackbar triggerfish | based mainly on capture | native | White-banded triggerfish |
| Rhinecanthus rectangulus | Pakoy | based mainly on capture | native | Wedge-tail triggerfish |
| Rhinecanthus verrucosus | Blackbelly picassofish | based mainly on capture | native | Blackbelly triggerfish |
| Rhinomuraena quaesita | Malibanos | based mainly on capture | native | Ribbon moray |
| Sargocentron caudimaculatum | Sigang batuhan | native | Silverspot squirrelfish | |
| Sargocentron punctatissimum | Baga-baga | based mainly on capture | native | Speckled squirrelfish |
| Scarus niger | Dusky parrotfish | based mainly on capture | native | Dusky parrotfish |
| Scarus psittacus | Common parrotfish | based mainly on capture | native | Common parrotfish |
| Scarus rubroviolaceus | Ember parrotfish | based mainly on capture | native | Ember parrotfish |
| Scolopsis bilineata | based mainly on capture | native | Two-lined monocle bream | |
| Scolopsis lineata | Buruba | based mainly on capture | native | Striped monocle bream |
| Scorpaenopsis diabolus | based mainly on capture | native | False stonefish | |
| Sphaeramia nematoptera | Dangat | based mainly on capture | native | Pajama cardinalfish |
| Stethojulis bandanensis | based mainly on capture | native | Red shoulder wrasse | |
| Stethojulis strigiventer | based mainly on capture | native | Three-ribbon wrasse | |
| Sufflamen bursa | Boomerang triggerfish | based mainly on capture | native | Boomerang triggerfish |
| Synchiropus picturatus | based mainly on capture | native | Picturesque dragonet | |
| Taenianotus triacanthus | based mainly on capture | native | Leaf scorpionfish | |
| Taeniura lymma | based mainly on capture | native | Ribbontail stingray | |
| Thalassoma amblycephalum | based mainly on capture | native | Bluntheaded wrasse | |
| Thalassoma hardwicke | based mainly on capture | native | Sixbar wrasse | |
| Thalassoma jansenii | based mainly on capture | native | Jansen's wrasse | |
| Thalassoma lunare | based mainly on capture | native | Moon wrasse | |
| Thalassoma lutescens | Mameng | based mainly on capture | native | Yellow-brown wrasse |
| Thalassoma purpureum | Mameng | based mainly on capture | native | Surge wrasse |
| Thalassoma trilobatum | based mainly on capture | native | Christmas wrasse | |
| Toxotes chatareus | Ataba | based mainly on capture | native | Spotted archerfish |
| Toxotes jaculatrix | Ataba | based mainly on capture | native | Banded archerfish |
| Upeneus tragula | Batuhan | native | Freckled goatfish | |
| Uropterygius macrocephalus | based mainly on capture | native | Needle-tooth moray | |
| Valenciennea strigata | Bia | based mainly on capture | native | Blueband goby |
| Xanthichthys auromarginatus | Papakol | based mainly on capture | native | Gilded triggerfish |
| Zanclus cornutus | based mainly on capture | native | Moorish idol | |
| Zebrasoma scopas | based mainly on capture | native | Twotone tang | |
| Zoramia gilberti | Dangat | based mainly on capture | native | Gilbert's cardinalfish |
| Zoramia leptacantha | based mainly on capture | native | Threadfin cardinalfish |
| Scientific Name | Local Name | Aquarium Demand met by | Occurrence | Other Name |
|---|---|---|---|---|
| Abalistes stellaris | Pakol | native | Starry triggerfish | |
| Ablabys taenianotus | based mainly on capture | native | Cockatoo waspfish | |
| Abudefduf saxatilis | Puyong dagat | based mainly on capture | misidentification | Sergeant-major |
| Acanthurus achilles | Indangan | based mainly on capture | questionable | Achilles tang |
| Acanthurus bariene | Indangan | based mainly on capture | native | Black-spot surgeonfish |
| Acanthurus blochii | Labahita | based mainly on capture | native | Ringtail surgeonfish |
| Acanthurus dussumieri | Eyestripe surgeonfish | based mainly on capture | native | Eyestripe surgeonfish |
| Acanthurus fowleri | native | Fowler's surgeonfish | ||
| Acanthurus gahhm | Indangan | questionable | Black surgeonfish | |
| Acanthurus guttatus | Indangan | based mainly on capture | native | Whitespotted surgeonfish |
| Acanthurus japonicus | Labahita | native | Japan surgeonfish | |
| Acanthurus leucocheilus | Labahita | native | Palelipped surgeonfish | |
| Acanthurus leucopareius | Labahita | based mainly on capture | native | Whitebar surgeonfish |
| Acanthurus lineatus | based mainly on capture | native | Lined surgeonfish | |
| Acanthurus maculiceps | Indangan | based mainly on capture | native | White-freckled surgeonfish |
| Acanthurus mata | Blue-lined surgeonfish | based mainly on capture | native | Elongate surgeonfish |
| Acanthurus nigricauda | based mainly on capture | native | Epaulette surgeonfish | |
| Acanthurus nigrofuscus | Brown surgeonfish | based mainly on capture | native | Brown surgeonfish |
| Acanthurus nigroris | Bluelined surgeonfish | based mainly on capture | native | Bluelined surgeonfish |
| Acanthurus nubilus | native | Bluelined surgeon | ||
| Acanthurus olivaceus | Orangespot surgeonfish | based mainly on capture | native | Orangespot surgeonfish |
| Acanthurus pyroferus | Labahita | based mainly on capture | native | Chocolate surgeonfish |
| Acanthurus thompsoni | Indangan | based mainly on capture | native | Thompson's surgeonfish |
| Acanthurus triostegus | Convict surgeonfish | based mainly on capture | native | Convict surgeonfish |
| Acanthurus xanthopterus | Labahita | based mainly on capture | native | Yellowfin surgeonfish |
| Acreichthys tomentosus | native | Bristle-tail file-fish | ||
| Alectis ciliaris | African pompano | based mainly on capture | native | African pompano |
| Aluterus scriptus | based mainly on capture | native | Scribbled leatherjacket filefish | |
| Amblyeleotris fasciata | Bia | based mainly on capture | native | Red-banded prawn-goby |
| Amblyeleotris fontanesii | Bia | based mainly on capture | native | Giant prawn-goby |
| Amblyeleotris guttata | Bia | based mainly on capture | native | Spotted prawn-goby |
| Amblyeleotris gymnocephala | based mainly on capture | native | Masked shrimpgoby | |
| Amblyeleotris periophthalma | Bia | based mainly on capture | native | Periophthalma prawn-goby |
| Amblyeleotris randalli | Bia | based mainly on capture | native | Randall's prawn-goby |
| Amblyeleotris steinitzi | Bia | based mainly on capture | native | Steinitz' prawn-goby |
| Amblyeleotris wheeleri | Bia | based mainly on capture | native | Gorgeous prawn-goby |
| Amblyglyphidodon aureus | based mainly on capture | native | Golden damselfish | |
| Amblyglyphidodon leucogaster | based mainly on capture | native | Yellowbelly damselfish | |
| Amblygobius albimaculatus | Bia | based mainly on capture | native | Butterfly goby |
| Amblygobius decussatus | Bia | based mainly on capture | native | Orange-striped goby |
| Amblygobius nocturnus | Bia | based mainly on capture | native | Nocturn goby |
| Amblygobius phalaena | based mainly on capture | native | Whitebarred goby | |
| Amblygobius sphynx | Bia | based mainly on capture | native | Sphinx goby |
| Amphiprion akindynos | based mainly on capture | questionable | Barrier reef anemonefish | |
| Amphiprion chrysopterus | based mainly on capture | native | Orangefin anemonefish | |
| Amphiprion melanopus | based mainly on capture | native | Fire clownfish | |
| Amphiprion ocellaris | based mainly on capture | native | Clown anemonefish | |
| Amphiprion percula | based mainly on capture | native | Orange clownfish | |
| Amphiprion perideraion | based mainly on capture | native | Pink anemonefish | |
| Amphiprion sebae | based mainly on capture | questionable | Sebae anemonefish | |
| Amphiprion thiellei | native | Thielle's anemonefish | ||
| Anampses caeruleopunctatus | Bluespotted tamarin | based mainly on capture | native | Bluespotted wrasse |
| Anampses femininus | based mainly on capture | questionable | Blue-striped orange tamarin | |
| Anampses geographicus | based mainly on capture | native | Geographic wrasse | |
| Anampses melanurus | based mainly on capture | native | White-spotted wrasse | |
| Anampses meleagrides | Dulas | based mainly on capture | native | Spotted wrasse |
| Anampses neoguinaicus | based mainly on capture | native | New Guinea wrasse | |
| Anampses twistii | based mainly on capture | native | Yellowbreasted wrasse | |
| Antennarius maculatus | based mainly on capture | native | Warty frogfish | |
| Antennarius striatus | based mainly on capture | native | Striated frogfish | |
| Apogonichthyoides timorensis | native | Timor cardinalfish | ||
| Aprion virescens | based mainly on capture | native | Green jobfish | |
| Arothron caeruleopunctatus | based mainly on capture | native | Blue-spotted puffer | |
| Aspidontus dussumieri | based mainly on capture | native | Lance blenny | |
| Asterropteryx semipunctata | Bia | based mainly on capture | native | Starry goby |
| Atrosalarias holomelas | based mainly on capture | native | Brown coral blenny | |
| Aulostomus chinensis | Chinese trumpetfish | based mainly on capture | native | Chinese trumpetfish |
| Austrolebias nigripinnis | based mainly on breeding | introduced | Blackfin pearlfish | |
| Awaous grammepomus | Bia | native | Scribbled goby | |
| Balistoides conspicillum | Clown triggerfish | based mainly on capture | native | Clown triggerfish |
| Barbonymus gonionotus | Silver barb | based mainly on breeding | introduced | Silver barb |
| Bathygobius cocosensis | Bia | based mainly on capture | native | Cocos frill-goby |
| Blenniella chrysospilos | based mainly on capture | native | Red-spotted blenny | |
| Bodianus loxozonus | based mainly on capture | native | Blackfin hogfish | |
| Bodianus mesothorax | Baga-baga | based mainly on capture | native | Splitlevel hogfish |
| Bodianus oxycephalus | based mainly on capture | questionable | ||
| Bodianus perditio | Batuan | based mainly on capture | questionable | Golden-spot hogfish |
| Bolbometopon muricatum | Loro | based mainly on capture | native | Green humphead parrotfish |
| Bryaninops amplus | Bia | based mainly on capture | native | Large whip goby |
| Bryaninops natans | Bia | based mainly on capture | native | Redeye goby |
| Bryaninops tigris | based mainly on capture | native | Black coral goby | |
| Bryaninops yongei | native | Whip coral goby | ||
| Butis amboinensis | Biyang sunog | based mainly on capture | native | Olive flathead-gudgeon |
| Callionymus delicatulus | native | Delicate dragonet | ||
| Callogobius hasseltii | Bia | based mainly on capture | native | Hasselt's goby |
| Calotomus carolinus | Mulmol | based mainly on capture | native | Carolines parrotfish |
| Calotomus spinidens | Isdang loro | native | Spinytooth parrotfish | |
| Canthigaster amboinensis | based mainly on capture | native | Spider-eye puffer | |
| Canthigaster coronata | based mainly on capture | questionable | Crowned puffer | |
| Caracanthus maculatus | based mainly on capture | native | Spotted coral croucher | |
| Carassius carassius | Wild goldfish | based mainly on breeding | introduced | Crucian carp |
| Centriscus scutatus | native | Grooved razor-fish | ||
| Centropyge colini | based mainly on capture | native | Cocos-Keeling angelfish | |
| Centropyge loriculus | based mainly on capture | native | Flame angel | |
| Centropyge shepardi | based mainly on capture | questionable | Mango angelfish | |
| Centropyge venusta | based mainly on capture | native | Purplemask angelfish | |
| Chaetodon auripes | Tapel | based mainly on capture | native | Oriental butterflyfish |
| Chaetodon austriacus | based mainly on capture | questionable | Blacktail butterflyfish | |
| Chaetodon decussatus | Indian vagabond butterflyfish | based mainly on capture | native | Indian vagabond butterflyfish |
| Chaetodon falcula | Paru-paro | based mainly on capture | questionable | Blackwedged butterflyfish |
| Chaetodon fasciatus | Paru-paro | based mainly on capture | questionable | Diagonal butterflyfish |
| Chaetodon flavirostris | based mainly on capture | questionable | Black butterflyfish | |
| Chaetodon guentheri | based mainly on capture | native | Crochet butterflyfish | |
| Chaetodon modestus | Paruparung dagat | based mainly on capture | native | Brown-banded butterflyfish |
| Chaetodon nippon | Japanese butterflyfish | based mainly on capture | native | Japanese butterflyfish |
| Chaetodon ocellicaudus | Paru-parung dagat | based mainly on capture | native | Spot-tail butterflyfish |
| Chaetodon oxycephalus | Paru-paro | based mainly on capture | native | Spot-nape butterflyfish |
| Chaetodon rainfordi | based mainly on capture | questionable | Rainford's butterflyfish | |
| Chaetodon selene | Paru-paro | based mainly on capture | native | Yellow-dotted butterflyfish |
| Chaetodon striatus | Paru-paro | based mainly on capture | questionable | Banded butterflyfish |
| Chaetodon wiebeli | based mainly on capture | native | Hongkong butterflyfish | |
| Chaetodontoplus caeruleopunctatus | Blue-spotted angelfish | based mainly on capture | endemic | Bluespotted angelfish |
| Chaetodontoplus chrysocephalus | based mainly on capture | native | Orangeface angelfish | |
| Cheilinus chlorourus | Floral wrasse | based mainly on capture | native | Floral wrasse |
| Chiloscyllium punctatum | Pating | based mainly on capture | native | Brownbanded bambooshark |
| Chitala chitala | based mainly on breeding | introduced | Clown knifefish | |
| Chitala ornata | introduced | Clown featherback | ||
| Chlorurus bleekeri | based mainly on capture | native | Bleeker's parrotfish | |
| Chlorurus frontalis | Loro | based mainly on capture | native | Pacific slopehead parrotfish |
| Chlorurus gibbus | based mainly on capture | misidentification | Heavybeak parrotfish | |
| Chlorurus perspicillatus | based mainly on capture | questionable | Spectacled parrotfish | |
| Choerodon azurio | native | Azurio tuskfish | ||
| Choerodon fasciatus | based mainly on capture | native | Harlequin tuskfish | |
| Choerodon jordani | Maming | based mainly on capture | native | Jordan's tuskfish |
| Chromis amboinensis | Kapal | based mainly on capture | native | Ambon chromis |
| Chromis analis | based mainly on capture | native | Yellow chromis | |
| Chromis atripes | based mainly on capture | native | Dark-fin chromis | |
| Chromis dimidiata | Lidong sa malalim | based mainly on capture | questionable | Chocolatedip chromis |
| Chromis elerae | based mainly on capture | native | Twinspot chromis | |
| Chromis iomelas | based mainly on capture | questionable | Half-and-half chromis | |
| Chromis leucura | based mainly on capture | native | Whitetail chromis | |
| Chromis lineata | based mainly on capture | native | Lined chromis | |
| Chromis margaritifer | based mainly on capture | native | Bicolor chromis | |
| Chromis xanthura | based mainly on capture | native | Paletail chromis | |
| Chrysiptera biocellata | based mainly on capture | native | Twinspot damselfish | |
| Chrysiptera brownriggii | based mainly on capture | native | Surge damselfish | |
| Chrysiptera caeruleolineata | based mainly on capture | native | Blueline demoiselle | |
| Chrysiptera cyanea | based mainly on capture | native | Sapphire devil | |
| Chrysiptera hemicyanea | questionable | Azure demoiselle | ||
| Chrysiptera oxycephala | based mainly on capture | native | Blue-spot demoiselle | |
| Chrysiptera tricincta | based mainly on capture | native | Threeband damselfish | |
| Chrysiptera unimaculata | based mainly on capture | native | Onespot demoiselle | |
| Cirrhilabrus cyanopleura | based mainly on capture | native | Blueside wrasse | |
| Cirrhilabrus exquisitus | based mainly on capture | native | Exquisite wrasse | |
| Cirrhilabrus lubbocki | based mainly on capture | native | Lubbock's wrasse | |
| Cirrhilabrus melanomarginatus | based mainly on capture | native | Blackfin fairy-warsse | |
| Cirrhilabrus punctatus | questionable | Dotted wrasse | ||
| Cirrhilabrus rubripinnis | based mainly on capture | native | Redfin wrasse | |
| Cirrhilabrus temminckii | based mainly on capture | native | Threadfin wrasse | |
| Cirripectes castaneus | based mainly on capture | native | Chestnut eyelash-blenny | |
| Cirripectes filamentosus | based mainly on capture | native | Filamentous blenny | |
| Cirripectes stigmaticus | based mainly on capture | native | Red-streaked blenny | |
| Cirripectes variolosus | based mainly on capture | native | Red-speckled blenny | |
| Congrogadus subducens | Batad | based mainly on capture | native | Carpet eel-blenny |
| Coptodon zillii | Zill's tilapia | based mainly on breeding | introduced | Redbelly tilapia |
| Coradion altivelis | based mainly on capture | native | Highfin coralfish | |
| Coradion chrysozonus | based mainly on capture | native | Goldengirdled coralfish | |
| Coradion melanopus | based mainly on capture | native | Twospot coralfish | |
| Coris dorsomacula | based mainly on capture | native | Pale-barred coris | |
| Coris picta | based mainly on capture | questionable | Comb wrasse | |
| Coris variegata | Dapple coris | based mainly on capture | misidentification | Dapple coris |
| Cryptocentrus cinctus | Bia | based mainly on capture | native | Yellow prawn-goby |
| Cryptocentrus fasciatus | based mainly on capture | native | Y-bar shrimp goby | |
| Cryptocentrus strigilliceps | Bia | based mainly on capture | native | Target shrimp goby |
| Ctenochaetus binotatus | Labahita | native | Twospot surgeonfish | |
| Ctenochaetus marginatus | Striped-fin surgeonfish | based mainly on capture | questionable | Striped-fin surgeonfish |
| Ctenochaetus striatus | Mangangadlit | based mainly on capture | native | Striated surgeonfish |
| Ctenochaetus strigosus | Mangangadlit | based mainly on capture | questionable | Spotted surgeonfish |
| Ctenogobiops aurocingulus | Bia | based mainly on capture | native | Gold-streaked prawn-goby |
| Ctenogobiops pomastictus | Bia | based mainly on capture | native | Gold-specked prawn-goby |
| Ctenogobiops tangaroai | Bia | based mainly on capture | native | Tangaroa shrimpgoby |
| Cyprinocirrhites polyactis | native | Swallowtail hawkfish | ||
| Cyprinus carpio | Karpa | based mainly on breeding | introduced | Common carp |
| Dactyloptena macracantha | based mainly on capture | native | Spotwing flying gurnard | |
| Dactyloptena orientalis | based mainly on capture | native | Oriental flying gurnard | |
| Dactylopus dactylopus | based mainly on capture | native | Fingered dragonet | |
| Dendrochirus biocellatus | based mainly on capture | native | Twospot turkeyfish | |
| Dermogenys pusilla | Needle gar | based mainly on breeding | questionable | Wrestling halfbeak |
| Diancistrus fuscus | native | Dusky brotulid | ||
| Dichotomyctere nigroviridis | native | Spotted green pufferfish | ||
| Diodon holocanthus | Botiting laot | based mainly on capture | native | Longspined porcupinefish |
| Diodon hystrix | Botiting laot | based mainly on capture | native | Spot-fin porcupinefish |
| Diproctacanthus xanthurus | based mainly on capture | native | Yellowtail tubelip | |
| Discordipinna griessingeri | Bia | native | Spikefin goby | |
| Drepane longimana | Concertina fish | native | Concertina fish | |
| Echeneis naucrates | Live sharksucker | based mainly on capture | native | Live sharksucker |
| Ecsenius aequalis | based mainly on capture | questionable | Fourline blenny | |
| Ecsenius bimaculatus | based mainly on capture | native | Twinspot coralblenny | |
| Ecsenius dilemma | based mainly on capture | endemic | Twocoat coralblenny | |
| Ecsenius lividanalis | based mainly on capture | native | Blackspot coralblenny | |
| Ecsenius melarchus | based mainly on capture | native | Yellow-eyed comb-tooth | |
| Ecsenius namiyei | based mainly on capture | native | Black comb-tooth | |
| Ecsenius oculus | based mainly on capture | native | Ocular blenny | |
| Ecsenius opsifrontalis | based mainly on capture | native | Comical blenny | |
| Ecsenius pictus | based mainly on capture | native | White-lined comb-tooth | |
| Ecsenius stigmatura | based mainly on capture | native | Tailspot coralblenny | |
| Ecsenius yaeyamaensis | based mainly on capture | native | Yaeyama blenny | |
| Eleotris acanthopoma | based mainly on capture | native | Spinecheek gudgeon | |
| Eleotris fusca | Batingulo | native | Dusky sleeper | |
| Ellochelon vaigiensis | Bunti | based mainly on capture | native | Squaretail mullet |
| Entomacrodus decussatus | based mainly on capture | native | Wavy-lined blenny | |
| Entomacrodus striatus | based mainly on capture | native | Reef margin blenny | |
| Eviota bifasciata | Bia | based mainly on capture | native | Twostripe Eviota |
| Eviota infulata | Bia | based mainly on capture | native | Epaulet dwarfgoby |
| Eviota nigriventris | Bia | based mainly on capture | questionable | Blackbelly goby |
| Eviota pellucida | misidentification | |||
| Exyrias belissimus | Bia | based mainly on capture | native | Mud reef-goby |
| Exyrias puntang | Bia | based mainly on capture | native | Puntang goby |
| Festucalex erythraeus | Dagum-dagum | based mainly on capture | native | |
| Fibramia thermalis | Dangat | based mainly on capture | native | Half-barred cardinal |
| Foa brachygramma | based mainly on capture | misidentification | Weed cardinalfish | |
| Fundulus heteroclitus | introduced | Mummichog | ||
| Fusigobius neophytus | Bia | based mainly on capture | native | Common fusegoby |
| Fusigobius signipinnis | Bia | native | Signalfin goby | |
| Glaucostegus typus | native | Giant shovelnose ray | ||
| Glossogobius giuris | Bia | based mainly on capture | native | Tank goby |
| Glyptoparus delicatulus | based mainly on capture | native | Delicate blenny | |
| Gnathanodon speciosus | Banlog | based mainly on capture | native | Golden trevally |
| Gnatholepis cauerensis | Bia | native | Eyebar goby | |
| Gobiodon histrio | Bia | based mainly on capture | native | Broad-barred goby |
| Gobiodon okinawae | Bia | based mainly on capture | native | Okinawa goby |
| Gomphosus caeruleus | based mainly on capture | native | Green birdmouth wrasse | |
| Gunnellichthys curiosus | based mainly on capture | native | Curious wormfish | |
| Gunnellichthys pleurotaenia | native | Onestripe wormfish | ||
| Gymnothorax rueppelliae | Malibanos | native | Banded moray | |
| Halichoeres argus | Argus wrasse | based mainly on capture | native | Argus wrasse |
| Halichoeres binotopsis | Labayan | based mainly on capture | native | Saowisata wrasse |
| Halichoeres chloropterus | based mainly on capture | native | Pastel-green wrasse | |
| Halichoeres chrysus | based mainly on capture | native | Canary wrasse | |
| Halichoeres hartzfeldii | Hartzfeld's wrasse | based mainly on capture | native | Hartzfeld's wrasse |
| Halichoeres leucoxanthus | based mainly on capture | questionable | Canarytop wrasse | |
| Halichoeres margaritaceus | based mainly on capture | native | Pink-belly wrasse | |
| Halichoeres marginatus | Labayan | based mainly on capture | native | Dusky wrasse |
| Halichoeres melanochir | based mainly on capture | native | Orangefin wrasse | |
| Halichoeres melasmapomus | based mainly on capture | native | Cheekspot wrasse | |
| Halichoeres miniatus | Circle-cheek wrasse | based mainly on capture | native | Circle-cheek wrasse |
| Halichoeres nebulosus | based mainly on capture | native | Nebulous wrasse | |
| Halichoeres podostigma | Axil spot wrasse | based mainly on capture | native | Axil spot wrasse |
| Halichoeres prosopeion | based mainly on capture | native | Twotone wrasse | |
| Halichoeres scapularis | Labayan | based mainly on capture | native | Zigzag wrasse |
| Halichoeres timorensis | based mainly on capture | native | Timor wrasse | |
| Halichoeres trimaculatus | Labayan | based mainly on capture | native | Threespot wrasse |
| Halichoeres zeylonicus | based mainly on capture | native | Goldstripe wrasse | |
| Helcogramma striata | based mainly on capture | native | Tropical striped triplefin | |
| Hemigymnus fasciatus | based mainly on capture | native | Barred thicklip | |
| Hemitrygon akajei | Pagi | based mainly on capture | questionable | Whip stingray |
| Heniochus diphreutes | based mainly on capture | native | False moorish idol | |
| Heniochus pleurotaenia | Paru-paro | based mainly on capture | questionable | Phantom bannerfish |
| Heniochus singularius | based mainly on capture | native | Singular bannerfish | |
| Heteroconger hassi | native | Spotted garden-eel | ||
| Heteropriacanthus cruentatus | Bullseye | based mainly on capture | native | Glasseye |
| Hippocampus abdominalis | based mainly on breeding | questionable | Big-belly seahorse | |
| Hippocampus comes | based mainly on capture | native | Tiger tail seahorse | |
| Hippocampus histrix | Kabayo-kabayohan | based mainly on capture | native | Thorny seahorse |
| Hipposcarus harid | based mainly on capture | native | Candelamoa parrotfish | |
| Histrio histrio | based mainly on capture | native | Sargassumfish | |
| Hologymnosus annulatus | based mainly on capture | native | Ring wrasse | |
| Hoplolatilus chlupatyi | based mainly on capture | native | Chameleon sand tilefish | |
| Hoplolatilus fourmanoiri | based mainly on capture | native | Yellow-spotted tilefish | |
| Hoplolatilus marcosi | based mainly on capture | native | Redback sand tilefish | |
| Hoplolatilus purpureus | based mainly on capture | native | Purple sand tilefish | |
| Hypseleotris compressa | questionable | Empire gudgeon | ||
| Ictalurus punctatus | Channel catfish | based mainly on capture | introduced | Channel catfish |
| Iniistius aneitensis | based mainly on capture | native | Yellowblotch razorfish | |
| Iniistius dea | based mainly on capture | native | Blackspot razorfish | |
| Iniistius pavo | Mameng | based mainly on capture | native | Peacock wrasse |
| Iniistius pentadactylus | Five-finger wrasse | based mainly on capture | native | Fivefinger wrasse |
| Istiblennius edentulus | based mainly on capture | native | Rippled rockskipper | |
| Istiblennius lineatus | based mainly on capture | native | Lined rockskipper | |
| Istigobius decoratus | Bia | based mainly on capture | native | Decorated goby |
| Istigobius goldmanni | Bia | based mainly on capture | native | Goldman's goby |
| Istigobius nigroocellatus | Bia | based mainly on capture | native | Black-spotted goby |
| Istigobius ornatus | Bia | native | Ornate goby | |
| Koumansetta hectori | Bia | based mainly on capture | native | Hector's goby |
| Kyphosus bigibbus | Idek | based mainly on capture | native | Brown chub |
| Labracinus cyclophthalmus | based mainly on breeding | native | Fire-tail devil | |
| Labrichthys unilineatus | based mainly on capture | native | Tubelip wrasse | |
| Labropsis alleni | based mainly on capture | native | Allen's tubelip | |
| Labropsis manabei | native | Northern tubelip | ||
| Labropsis micronesica | based mainly on capture | questionable | Micronesian wrasse | |
| Labropsis xanthonota | based mainly on capture | native | Yellowback tubelip | |
| Lactoria diaphana | Kaban-kaban | based mainly on capture | native | Roundbelly cowfish |
| Lagocephalus lunaris | native | Lunartail puffer | ||
| Lagocephalus sceleratus | native | Silver-cheeked toadfish | ||
| Laiphognathus multimaculatus | based mainly on capture | native | Spotty blenny | |
| Leptojulis cyanopleura | based mainly on capture | native | Shoulder-spot wrasse | |
| Leptoscarus vaigiensis | Marbled parrotfish | based mainly on capture | native | Marbled parrotfish |
| Lobotes surinamensis | Atlantic tripletail | native | Tripletail | |
| Lubbockichthys multisquamatus | native | Fine-scaled dottyback | ||
| Lutjanus decussatus | Checkered snapper | based mainly on capture | native | Checkered snapper |
| Lutjanus fulvus | Bangbangin | based mainly on capture | native | Blacktail snapper |
| Lutjanus quinquelineatus | Five-lined snapper | based mainly on capture | native | Five-lined snapper |
| Luzonichthys waitei | native | Waite's splitfin | ||
| Macolor niger | Black & white snapper | native | Black and white snapper | |
| Macropharyngodon ornatus | based mainly on capture | native | False leopard | |
| Mahidolia mystacina | Bia | based mainly on capture | native | Flagfin prawn goby |
| Malacanthus latovittatus | Matang dagat | based mainly on capture | native | Blue blanquillo |
| Manonichthys splendens | misidentification | Splendid dottyback | ||
| Meiacanthus anema | based mainly on capture | native | Threadless blenny | |
| Meiacanthus vittatus | based mainly on capture | questionable | One-striped fangblenny | |
| Melichthys indicus | based mainly on capture | questionable | Indian triggerfish | |
| Melichthys niger | Pakol | based mainly on capture | native | Black triggerfish |
| Microphis brachyurus | Dagum-dagum | based mainly on capture | native | Short-tailed pipefish |
| Mistichthys luzonensis | Sinarapan | endemic | ||
| Monopterus albus | native | Asian swamp eel | ||
| Monotaxis grandoculis | Bitilya | based mainly on capture | native | Humpnose big-eye bream |
| Mulloidichthys flavolineatus | Saramulyete | native | Yellowstripe goatfish | |
| Mylossoma duriventre | questionable | |||
| Myrichthys maculosus | based mainly on capture | native | Tiger snake eel | |
| Myripristis amaena | Baga-baga | native | Brick soldierfish | |
| Myripristis botche | Baga-baga | native | Blacktip soldierfish | |
| Narcine timlei | based mainly on capture | native | Spotted numbfish | |
| Naso annulatus | Whitemargin | native | Whitemargin unicornfish | |
| Naso hexacanthus | Isdang ilong | based mainly on capture | native | Sleek unicornfish |
| Naso lituratus | Orangespine unicornfish | based mainly on capture | native | Orangespine unicornfish |
| Naso lopezi | Elongate unicornfish | based mainly on capture | native | Elongate unicornfish |
| Naso thynnoides | Oneknife unicornfish | native | Oneknife unicornfish | |
| Naso unicornis | Bluespine unicornfish | based mainly on capture | native | Bluespine unicornfish |
| Neocirrhites armatus | based mainly on capture | native | Flame hawkfish | |
| Neopomacentrus azysron | based mainly on capture | native | Yellowtail demoiselle | |
| Neosynchiropus ocellatus | Bunog | native | Ocellated dragonet | |
| Novaculoides macrolepidotus | Mameng | based mainly on capture | native | Seagrass wrasse |
| Odonus niger | based mainly on capture | native | Red-toothed triggerfish | |
| Ogilbyina queenslandiae | questionable | Queensland dottyback | ||
| Omobranchus ferox | based mainly on capture | native | Gossamer blenny | |
| Ophiocara porocephala | Matapolo | based mainly on capture | native | Northern mud gudgeon |
| Oplopomus oplopomus | Bia | based mainly on capture | native | Spinecheek goby |
| Oreochromis aureus | Tilapia | based mainly on breeding | introduced | Blue tilapia |
| Oreochromis spilurus | based mainly on breeding | introduced | Sabaki tilapia | |
| Oryzias luzonensis | Coscosleng | endemic | ||
| Osteoglossum bicirrhosum | Silver arowana | based mainly on breeding | questionable | Arawana |
| Ostorhinchus aureus | Bungka | based mainly on capture | native | Ring-tailed cardinalfish |
| Ostorhinchus cyanosoma | Dangat | based mainly on breeding | native | Yellowstriped cardinalfish |
| Ostorhinchus taeniophorus | Dangat | native | Reef-flat cardinalfish | |
| Ostracion solorensis | native | Reticulate boxfish | ||
| Oxycheilinus celebicus | Celebes wrasse | based mainly on capture | native | Celebes wrasse |
| Oxycheilinus digramma | Cheeklined wrasse | based mainly on capture | native | Cheeklined wrasse |
| Oxycheilinus orientalis | Mameng | based mainly on capture | native | Oriental maori wrasse |
| Oxyjulis californica | based mainly on capture | questionable | Señorita | |
| Oxymetopon compressus | based mainly on capture | native | Robust ribbongoby | |
| Oxymetopon cyanoctenosum | based mainly on capture | native | Blue-barred ribbon goby | |
| Oxyurichthys microlepis | Bia | based mainly on capture | native | Maned goby |
| Oxyurichthys papuensis | Bia | based mainly on capture | native | Frogface goby |
| Paracentropogon longispinis | based mainly on capture | native | Wispy waspfish | |
| Parachaetodon ocellatus | Paru-paro | based mainly on capture | native | Sixspine butterflyfish |
| Paracheilinus carpenteri | based mainly on capture | native | Pink flasher | |
| Paracheilinus filamentosus | based mainly on capture | native | Filamentous wrasse | |
| Paracheilinus lineopunctatus | based mainly on capture | native | Spot-lined flasher | |
| Parachromis managuensis | Managuense | introduced | Jaguar guapote | |
| Paragobiodon echinocephalus | Bia | based mainly on capture | native | Redhead goby |
| Paragobiodon xanthosoma | Bia | based mainly on capture | native | Emerald coral goby |
| Parajulis poecilepterus | Buntogon | based mainly on capture | questionable | |
| Parapercis hexophtalma | based mainly on capture | native | Speckled sandperch | |
| Parapercis schauinslandii | based mainly on capture | native | Redspotted sandperch | |
| Parapercis tetracantha | based mainly on capture | native | Reticulated sandperch | |
| Parapercis xanthozona | based mainly on capture | native | Yellowbar sandperch | |
| Parapterois heterura | based mainly on capture | native | Blackfoot firefish | |
| Paratrypauchen microcephalus | based mainly on capture | native | Comb goby | |
| Parma polylepis | based mainly on capture | native | Banded parma | |
| Parupeneus forsskali | questionable | Red Sea goatfish | ||
| Parupeneus macronemus | Long-barbel goatfish | native | Long-barbel goatfish | |
| Pastinachus sephen | Page | based mainly on capture | native | Cowtail stingray |
| Pempheris adusta | native | Dusky sweeper | ||
| Pempheris oualensis | native | Silver sweeper | ||
| Periophthalmus argentilineatus | Bia | based mainly on capture | native | Barred mudskipper |
| Periophthalmus barbarus | based mainly on capture | native | Atlantic mudskipper | |
| Pervagor melanocephalus | Sulay bagyo | based mainly on capture | native | Redtail filefish |
| Petroscirtes breviceps | based mainly on capture | native | Striped poison-fang blenny mimic | |
| Petroscirtes mitratus | based mainly on capture | native | Floral blenny | |
| Petroscirtes xestus | based mainly on capture | native | Xestus sabretooth blenny | |
| Pholidichthys leucotaenia | based mainly on capture | native | Convict blenny | |
| Pictichromis diadema | native | Diadem dottyback | ||
| Platax batavianus | Dahong-gabi | native | Humpback batfish | |
| Plectroglyphidodon dickii | based mainly on capture | native | Blackbar devil | |
| Plectroglyphidodon lacrymatus | based mainly on capture | native | Whitespotted devil | |
| Plectroglyphidodon leucozonus | based mainly on capture | native | Singlebar devil | |
| Plectroglyphidodon phoenixensis | based mainly on capture | native | Phoenix devil | |
| Plesiops coeruleolineatus | native | Crimsontip longfin | ||
| Plesiops corallicola | native | Bluegill longfin | ||
| Plotosus lineatus | Ito | based mainly on capture | native | Striped eel catfish |
| Poecilia reticulata | Guppy | based mainly on breeding | introduced | Guppy |
| Polydactylus sexfilis | based mainly on capture | native | Sixfinger threadfin | |
| Pomacentrus bankanensis | based mainly on capture | native | Speckled damselfish | |
| Pomacentrus melanochir | Palata | based mainly on capture | native | Indonesian damsel |
| Pomacentrus vaiuli | based mainly on capture | native | Ocellate damselfish | |
| Priacanthus blochii | Siga | native | Paeony bulleye | |
| Priolepis boreus | based mainly on capture | questionable | ||
| Priolepis cincta | Bia | based mainly on capture | native | Banded reef goby |
| Priolepis semidoliata | Bia | based mainly on capture | native | Half-barred goby |
| Pristotis obtusirostris | based mainly on capture | native | Gulf damselfish | |
| Pseudanthias bicolor | based mainly on capture | native | Bicolor anthias | |
| Pseudanthias huchtii | native | Red-cheeked fairy basslet | ||
| Pseudanthias hypselosoma | native | Stocky anthias | ||
| Pseudanthias lori | native | Lori's anthias | ||
| Pseudanthias randalli | native | Randall's fairy basslet | ||
| Pseudanthias smithvanizi | native | Princess anthias | ||
| Pseudobalistes flavimarginatus | native | Yellowmargin triggerfish | ||
| Pseudobalistes fuscus | Papakol | based mainly on capture | native | Yellow-spotted triggerfish |
| Pseudocheilinus tetrataenia | based mainly on capture | native | Four-lined wrasse | |
| Pseudochromis cyanotaenia | native | Surge dottyback | ||
| Pseudochromis fuscus | native | Brown dottyback | ||
| Pseudocoris yamashiroi | based mainly on capture | native | Redspot wrasse | |
| Pseudodax moluccanus | based mainly on capture | native | Chiseltooth wrasse | |
| Pseudojuloides cerasinus | based mainly on capture | native | Smalltail wrasse | |
| Pseudolabrus japonicus | based mainly on capture | questionable | ||
| Pseudomonacanthus macrurus | Pakol | native | Strap-weed file-fish | |
| Pseudoplesiops typus | native | Hidden basslet | ||
| Pseudotriacanthus strigilifer | Sungay-sungayan | native | Long-spined tripodfish | |
| Pteragogus cryptus | native | Cryptic wrasse | ||
| Pteragogus flagellifer | based mainly on capture | native | Cocktail wrasse | |
| Ptereleotris evides | based mainly on capture | native | Blackfin dartfish | |
| Ptereleotris grammica | native | Lined dartfish | ||
| Ptereleotris hanae | based mainly on capture | native | Blue hana goby | |
| Ptereleotris heteroptera | based mainly on capture | native | Blacktail goby | |
| Ptereleotris microlepis | based mainly on capture | native | Blue gudgeon | |
| Ptereleotris uroditaenia | native | Flagtail dartfish | ||
| Ptereleotris zebra | based mainly on capture | native | Chinese zebra goby | |
| Pterois miles | based mainly on capture | questionable | Devil firefish | |
| Pterygoplichthys disjunctivus | introduced | Vermiculated sailfin catfish | ||
| Pterygoplichthys pardalis | introduced | Amazon sailfin catfish | ||
| Rhinopias eschmeyeri | based mainly on capture | native | Eschmeyer's scorpionfish | |
| Rhinopias frondosa | based mainly on capture | native | Weedy scorpionfish | |
| Salarias ceramensis | Anay-anay | based mainly on capture | native | Seram blenny |
| Salarias fasciatus | based mainly on capture | native | Jewelled blenny | |
| Salarias guttatus | based mainly on capture | native | Breast-spot blenny | |
| Sargocentron diadema | Crown squirrelfish | based mainly on capture | native | Crown squirrelfish |
| Sarotherodon melanotheron | based mainly on breeding | introduced | Blackchin tilapia | |
| Scarus dimidiatus | based mainly on capture | native | Yellowbarred parrotfish | |
| Scarus dubius | Yapot | based mainly on capture | questionable | Regal parrot |
| Scarus flavipectoralis | Loro | based mainly on capture | native | Yellowfin parrotfish |
| Scarus globiceps | Globehead parrotfish | native | Globehead parrotfish | |
| Scarus hypselopterus | Java parrotfish | based mainly on capture | native | Yellow-tail parrotfish |
| Scarus oviceps | Darkcapped parrotfish | based mainly on breeding | native | Dark capped parrotfish |
| Scarus prasiognathos | Loro | based mainly on capture | native | Singapore parrotfish |
| Scarus schlegeli | Loro | based mainly on capture | native | Yellowband parrotfish |
| Scarus tricolor | based mainly on capture | native | Tricolour parrotfish | |
| Schismatogobius deraniyagalai | based mainly on capture | native | Redneck goby | |
| Scolopsis ghanam | Arabian monocle bream | based mainly on capture | questionable | Arabian monocle bream |
| Scorpaenodes parvipinnis | based mainly on capture | native | Lowfin scorpionfish | |
| Scuticaria tigrina | Malibanos | based mainly on capture | native | Tiger reef-eel |
| Serranocirrhitus latus | native | Hawkfish anthias | ||
| Siganus argenteus | native | Streamlined spinefoot | ||
| Siganus corallinus | Balangin | native | Blue-spotted spinefoot | |
| Siganus javus | Lusay | native | Streaked spinefoot | |
| Siganus lineatus | Balanglin | native | Golden-lined spinefoot | |
| Siganus puellus | Balawis | native | Masked spinefoot | |
| Siganus spinus | Balawis batuhan | native | Little spinefoot | |
| Siganus unimaculatus | based mainly on capture | native | Blotched foxface | |
| Siganus vermiculatus | Dangit | based mainly on capture | native | Vermiculated spinefoot |
| Siganus virgatus | Balangin | based mainly on capture | native | Barhead spinefoot |
| Siganus vulpinus | based mainly on capture | native | Foxface | |
| Signigobius biocellatus | Bia | based mainly on capture | native | Twinspot goby |
| Solenostomus armatus | native | Armored pipefish | ||
| Stanulus seychellensis | based mainly on capture | native | Seychelle's blenny | |
| Stegastes leucostictus | based mainly on capture | questionable | Beaugregory | |
| Stegastes variabilis | based mainly on capture | error | Cocoa damselfish | |
| Stethojulis interrupta | Mameng | based mainly on capture | native | Cutribbon wrasse |
| Stethojulis trilineata | based mainly on capture | native | Three-lined rainbowfish | |
| Stiphodon semoni | based mainly on capture | native | ||
| Stonogobiops nematodes | Bia | based mainly on capture | native | Filament-finned prawn-goby |
| Stonogobiops xanthorhinica | based mainly on capture | native | Yellownose prawn-goby | |
| Suezichthys gracilis | based mainly on capture | native | Slender wrasse | |
| Sufflamen chrysopterum | Halfmoon triggerfish | based mainly on capture | native | Halfmoon triggerfish |
| Sufflamen fraenatum | Masked triggerfish | based mainly on capture | native | Masked triggerfish |
| Symphorichthys spilurus | Maya maya | based mainly on capture | native | Sailfin snapper |
| Synchiropus morrisoni | native | Morrison's dragonet | ||
| Synchiropus splendidus | Bunog | based mainly on capture | native | Mandarinfish |
| Synodus intermedius | Kalaso | based mainly on capture | questionable | Sand diver |
| Thalassoma quinquevittatum | based mainly on capture | native | Fivestripe wrasse | |
| Trichonotus setiger | based mainly on capture | native | Spotted sand-diver | |
| Trimma naudei | native | Naude's rubble goby | ||
| Trimma striatum | Bia | based mainly on capture | native | Stripehead goby |
| Trimma tevegae | native | Blue-striped cave goby | ||
| Upeneus sulphureus | Putikan | native | Sulphur goatfish | |
| Upeneus vittatus | Saramuliete | native | Yellowstriped goatfish | |
| Uranoscopus bicinctus | based mainly on capture | native | Marbled stargazer | |
| Uranoscopus japonicus | based mainly on capture | native | ||
| Uropterygius concolor | Payangitan | based mainly on capture | native | Unicolor snake moray |
| Valenciennea helsdingenii | Bia | based mainly on capture | native | Twostripe goby |
| Valenciennea immaculata | native | Red-lined sleeper | ||
| Valenciennea longipinnis | Bia | based mainly on capture | native | Long-finned goby |
| Valenciennea muralis | Bia | based mainly on capture | native | Mural goby |
| Valenciennea puellaris | based mainly on capture | native | Maiden goby | |
| Valenciennea sexguttata | Bia | based mainly on capture | native | Sixspot goby |
| Valenciennea wardii | native | Ward's sleeper | ||
| Vanderhorstia ambanoro | based mainly on capture | native | Ambanoro prawn-goby | |
| Vanderhorstia mertensi | native | Mertens' prawn-goby | ||
| Vanderhorstia ornatissima | based mainly on capture | native | Ornate prawn-goby | |
| Wetmorella nigropinnata | based mainly on capture | native | Sharpnose wrasse | |
| Xenocephalus elongatus | based mainly on capture | native | ||
| Xenojulis margaritaceus | Mameng | based mainly on capture | native | Finspot wrasse |
| Xiphasia setifer | based mainly on capture | native | Hairtail blenny | |
| Zebrasoma flavescens | Labahita | based mainly on capture | native | Yellow tang |
| Zebrasoma velifer | Sailfin tang | based mainly on capture | native | Sailfin tang |