| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Australian | Zoogeographic realm | native | 45563 |
| Dakrong River | River (basin) | native | 89722 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Erhjen River | River (basin) | native | 36073 |
| Ethiopian | Zoogeographic realm | native | 3971 |
| Indian Ocean | Sea/Bay/Gulf | native | 7050 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Kaoping River | River (basin) | native | 36073 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Laguna de Bay | Lake | native | 280 |
| Lake Lanao | Lake | native | 13446 |
| Mekong | River (basin) | native | 12693 |
| Naujan Lake | Lake | native | 13446 |
| Oriental | Zoogeographic realm | native | 26336 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Palearctic | Zoogeographic realm | native | 26336 |
| Pearl River | River (basin) | native | 89718 |
| Poso | Lake | native | 26747 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3971 |
| South China Sea | Sea/Bay/Gulf | native | 9706 |
| Taal Lake | Lake | native | 12165 |
| Tahiti Basins | River (basin) | native | 12790 |
| Xi Jiang | River (basin) | native | 33340 |
| Yangtze | River (basin) | native | 45563 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |
| Zambezi | River (basin) | native | 39494 |