| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Andaman Sea | Sea/Bay/Gulf | native | 5736 |
| Arabian Sea | Sea/Bay/Gulf | native | 3197 |
| Bay of Bengal | Sea/Bay/Gulf | native | 3197 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Calauag Bay | Sea/Bay/Gulf | native | 47571 |
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 7300 |
| East China Sea | Sea/Bay/Gulf | native | 3197 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 33390 |
| Gulf of Aden | Sea/Bay/Gulf | native | 3197 |
| Gulf of Oman | Sea/Bay/Gulf | native | 3197 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 3197 |
| Indian Ocean | Sea/Bay/Gulf | native | 33390 |
| Indonesian Sea | Sea/Bay/Gulf | native | 3197 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 3197 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Leyte Gulf | Sea/Bay/Gulf | native | 68980 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 7300 |
| Panguil Bay | Sea/Bay/Gulf | native | 47626 |
| Peng-hu Island | Sea/Bay/Gulf | native | 43515 |
| Persian Gulf | Sea/Bay/Gulf | native | 3197 |
| Polynesian Waters | Sea/Bay/Gulf | native | 3197 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Sea of Japan | Sea/Bay/Gulf | native | 559 |
| Sogod Bay | Sea/Bay/Gulf | native | 31411 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3287 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern Palawan | Sea/Bay/Gulf | native | 58652 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 10558 |
| Tahiti I. | Sea/Bay/Gulf | native | 3197 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| Tung-hsiao | Sea/Bay/Gulf | native | 43510 |
| Yellow Sea | Sea/Bay/Gulf | native | 3197 |
| Yun-gan | Sea/Bay/Gulf | native | 43515 |