| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Adma River | River (basin) | introduced | 89719 |
| Albegna | River (basin) | native | 45688 |
| Amudar'ya | River (basin) | introduced | 39701 |
| Amur | River (basin) | native | 26334 |
| Aral Sea | Sea/Bay/Gulf | native | 26334 |
| Australian | Zoogeographic realm | introduced | 6390 |
| Ba Be Lake | Lake | introduced | 46453 |
| Balsas river | River (basin) | introduced | 58351 |
| Baltic Sea | Sea/Bay/Gulf | introduced | 36252 |
| Bato | Lake | introduced | 280 |
| Beijiang River | River (basin) | native | 89718 |
| Bhimtal Lake | Lake | introduced | 89721 |
| Black Sea | Sea/Bay/Gulf | native | 26334 |
| Bug | River (basin) | native | 59043 |
| Buhi | Lake | introduced | 280 |
| Buluan | Lake | introduced | 13492 |
| Caspian Sea | Lake | native | 26334 |
| Cauvery | River (basin) | introduced | 43636 |
| Central Danube | River (basin) | native | 59043 |
| Central Dnieper | River (basin) | native | 59043 |
| Central Don | River (basin) | native | 59043 |
| Chesapeake Bay | Sea/Bay/Gulf | Native | 93252 |
| Colorado River | River (basin) | introduced | 38738 |
| Crimean Peninsula | River (basin) | native | 59043 |
| Da River | River (basin) | introduced | 89724 |
| Dakrong River | River (basin) | introduced | 89722 |
| Danube | River (basin) | native | 185 |
| Danube Delta | River (basin) | native | 59043 |
| Desna | River (basin) | native | 59043 |
| Dnester | River (basin) | native | 59043 |
| Dnieper | River (basin) | introduced | 59042 |
| Dnieper-Bug Liman | River (basin) | native | 59043 |
| Don | River (basin) | native | 58293 |
| Don Delta | River (basin) | native | 59043 |
| Eastern Black Sea | River (basin) | native | 59043 |
| Eastern Caspian Sea river drainages and lakes | River (basin) | native | 59043 |
| Erqishi River | River (basin) | native | 41093 |
| Ethiopian | Zoogeographic realm | introduced | 1739 |
| Fiora | River (basin) | introduced | 45688 |
| Fraser | River (basin) | introduced | 78809 |
| Gaylegphug | River (basin) | introduced | 40882 |
| Godavari | River (basin) | introduced | 43636 |
| Great Fish | River (basin) | introduced | 94788 |
| Great Lake | Lake | introduced | 33813 |
| Han | River (basin) | introduced | 58345 |
| Issyk-Kul Lake | Lake | introduced | 41059 |
| Jayanti River | River (basin) | introduced | 89719 |
| Khoper | River (basin) | native | 59043 |
| Krinka | River (basin) | native | 59043 |
| Krishna River | River (basin) | introduced | 43636 |
| Kuban River | River (basin) | native | 58296 |
| Kum | River (basin) | introduced | 58345 |
| Laguna de Bay | Lake | introduced | 13460 |
| Lake Baikal | Lake | native | 58294 |
| Lake Biwa | Lake | introduced | 78994 |
| Lake Lanao | Lake | introduced | 10888 |
| Lake Mainit | Lake | introduced | 4867 |
| Lower Danube | River (basin) | native | 59043 |
| Lower Dnieper | River (basin) | native | 59043 |
| Lower Volga | River (basin) | native | 59043 |
| Marmara | Lake | introduced | 86351 |
| Medvedista | River (basin) | native | 59043 |
| Mekong | River (basin) | introduced | 12693 |
| Mississippi River | River (basin) | introduced | 46969 |
| Missouri River | River (basin) | introduced | 78789 |
| Murray-Darling | River (basin) | introduced | 6390 |
| Nainital Lake | Lake | introduced | 89721 |
| Nakdong | River (basin) | introduced | 58345 |
| Naujan Lake | Lake | introduced | 13446 |
| Naukuchiatal Lake | Lake | introduced | 89721 |
| Nearctic | Zoogeographic realm | introduced | 12204 |
| Neotropical | Zoogeographic realm | introduced | 185 |
| Northern Caspian Sea river drainages and lakes | River (basin) | native | 59043 |
| Ombrone | River (basin) | introduced | 45688 |
| Orange | River (basin) | introduced | 94818 |
| Oriental | Zoogeographic realm | introduced | 1739 |
| Palearctic | Zoogeographic realm | endemic | 185 |
| Periyar | Lake | introduced | 45208 |
| Poso | Lake | introduced | 26747 |
| Prut | River (basin) | native | 59043 |
| Psel | River (basin) | native | 59043 |
| Rio Grande | River (basin) | introduced | 78807 |
| Sabaki | River (basin) | introduced | 30558 |
| Sakhalin Island | River (basin) | native | 58299 |
| Sal | River (basin) | native | 59043 |
| Sarata | River (basin) | native | 59043 |
| Sea of Azov river drainages and lakes | River (basin) | native | 59043 |
| Severskiy Donets | River (basin) | native | 59043 |
| Siret | River (basin) | native | 59043 |
| Small Don Central | River (basin) | native | 59043 |
| Southern Caspian Sea river drainages and lakes | River (basin) | native | 59043 |
| Sumjin | River (basin) | introduced | 58345 |
| Syvash abo Gnyle more | River (basin) | native | 59043 |
| Taal Lake | Lake | introduced | 13446 |
| Tana River | River (basin) | introduced | 52331 |
| Tisza | River (basin) | native | 59043 |
| Toba | Lake | introduced | 57970 |
| Tonle Sap | Lake | introduced | 33813 |
| Upper Don | River (basin) | native | 59043 |
| Ural | River (basin) | native | 59043 |
| Uruguay | River (basin) | introduced | 79585 |
| Volga | River (basin) | native | 58297 |
| Waccamaw | Lake | introduced | 35360 |
| Western Caspian Sea river drainages and lakes | River (basin) | native | 59043 |
| Yangtze | River (basin) | native | 45259 |
| Yegorlyk-Manych | River (basin) | native | 59043 |
| Yili River | River (basin) | native | 41093 |
| Youngsan | River (basin) | introduced | 58345 |
| Zambezi | River (basin) | introduced | 13337 |