| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Andaman Sea | Sea/Bay/Gulf | native | 5736 |
| Arabian Sea | Sea/Bay/Gulf | native | 3287 |
| Bay of Bengal | Sea/Bay/Gulf | native | 3287 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 7300 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aden | Sea/Bay/Gulf | native | 3287 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Oman | Sea/Bay/Gulf | native | 3287 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 1632 |
| Hancock Northwest Seamount | Seamount | native | 50660 |
| Hancock Southeast Seamount | Seamount | native | 50613 |
| Indian Ocean | Sea/Bay/Gulf | native | 2334 |
| Indonesian Sea | Sea/Bay/Gulf | native | 1385 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 45894 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Manila Bay | Sea/Bay/Gulf | native | 761 |
| Mediterranean Sea | Sea/Bay/Gulf | introduced | 72453 |
| Milne Bay | Sea/Bay/Gulf | native | 41468 |
| North Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 7300 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 7300 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 3287 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 3287 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 10558 |
| Tung-hsiao | Sea/Bay/Gulf | native | 43510 |
| Visayan Sea | Sea/Bay/Gulf | native | 110390 |
| Yellow Sea | Sea/Bay/Gulf | native | 3287 |