| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5222 |
| Arabian Sea | Sea/Bay/Gulf | native | 5222 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aden | Sea/Bay/Gulf | native | 11441 |
| Indian Ocean | Sea/Bay/Gulf | native | 5222 |
| Milne Bay | Sea/Bay/Gulf | native | 41468 |
| North Australian Shelf | Sea/Bay/Gulf | native | 30874 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 4787 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 4787 |
| Pacific Ocean | Sea/Bay/Gulf | native | 4787 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 4787 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 4787 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Yellow Sea | Sea/Bay/Gulf | native | 5222 |