| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Andaman Sea | Sea/Bay/Gulf | native | 45255 |
| Arabian Sea | Sea/Bay/Gulf | native | 4787 |
| Atulayan Bay | Sea/Bay/Gulf | questionable | 41469 |
| Carigara Bay | Sea/Bay/Gulf | questionable | 46323 |
| Davao Gulf | Sea/Bay/Gulf | questionable | 43437 |
| Gulf of Aden | Sea/Bay/Gulf | native | 5222 |
| Indian Ocean | Sea/Bay/Gulf | native | 5222 |
| Lagonoy Gulf | Sea/Bay/Gulf | questionable | 43283 |
| Leyte Gulf | Sea/Bay/Gulf | questionable | 31411 |
| Ormoc Bay | Sea/Bay/Gulf | questionable | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | questionable | 5222 |
| Panguil Bay | Sea/Bay/Gulf | questionable | 47626 |
| Persian Gulf | Sea/Bay/Gulf | native | 4787 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| San Miguel Bay | Sea/Bay/Gulf | questionable | 45334 |
| South China Sea | Sea/Bay/Gulf | questionable | 31075 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | questionable | 42419 |
| Tañon Strait | Sea/Bay/Gulf | questionable | 11337 |
| Verde Island Passage | Sea/Bay/Gulf | questionable | 37603 |