| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Arabian Sea | Sea/Bay/Gulf | native | 2872 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 4339 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5736 |
| Bermuda | Sea/Bay/Gulf | native | 3819 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Calauag Bay | Sea/Bay/Gulf | native | 47571 |
| Canary Current | Sea/Bay/Gulf | native | 4339 |
| Cape Verde | Sea/Bay/Gulf | native | 94080 |
| Caribbean Sea | Sea/Bay/Gulf | native | 3819 |
| Carigara Bay | Sea/Bay/Gulf | native | 46317 |
| Celestún Biosphere Reserve | Sea/Bay/Gulf | native | 74908 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 1602 |
| Discovery Bay | Sea/Bay/Gulf | native | 35141 |
| East Brazil Shelf | Sea/Bay/Gulf | native | 5217 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Aden | Sea/Bay/Gulf | native | 5450 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Gulf of Mexico | Sea/Bay/Gulf | native | 7251 |
| Indian Ocean | Sea/Bay/Gulf | native | 4339 |
| Indonesian Sea | Sea/Bay/Gulf | native | 6567 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 1602 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Milne Bay | Sea/Bay/Gulf | native | 41468 |
| North Australian Shelf | Sea/Bay/Gulf | native | 1602 |
| North Brazil Shelf | Sea/Bay/Gulf | native | 5217 |
| Northeast U.S. Continental Shelf | Sea/Bay/Gulf | native | 7251 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Central-American Coastal | Sea/Bay/Gulf | native | 3819 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 1602 |
| Polynesian Waters | Sea/Bay/Gulf | native | 1602 |
| Ragay Gulf | Sea/Bay/Gulf | native | 47919 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46240 |
| Sargasso Sea | Sea/Bay/Gulf | native | 44187 |
| Shiliao River | River (basin) | native | 36073 |
| Sikao Creek | River (basin) | native | 52823 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 5491 |
| South Brazil Shelf | Sea/Bay/Gulf | native | 5217 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southeast U.S. Continental Shelf | Sea/Bay/Gulf | native | 5521 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 42484 |
| Tahiti I. | Sea/Bay/Gulf | native | 89972 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 53416 |
| Yellow Sea | Sea/Bay/Gulf | native | 4868 |