| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| Chang-hwa | Sea/Bay/Gulf | native | 43515 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Gulf of Aden | Sea/Bay/Gulf | native | 5450 |
| Hsiao-liu-chiu | Sea/Bay/Gulf | native | 43515 |
| Indian Ocean | Sea/Bay/Gulf | native | 9682 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 583 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 48497 |
| Panguil Bay | Sea/Bay/Gulf | native | 47626 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Red Sea | Sea/Bay/Gulf | native | 12541 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Taal Lake | Lake | native | 80679 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| Yellow Sea | Sea/Bay/Gulf | native | 4868 |