| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5285 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 1602 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| East China Sea | Sea/Bay/Gulf | native | 1602 |
| Ethiopian | Zoogeographic realm | native | 13333 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Indonesian Sea | Sea/Bay/Gulf | native | 1602 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 33390 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lutao Island | Sea/Bay/Gulf | native | 11104 |
| Mekong | River (basin) | native | 12693 |
| North Australian Shelf | Sea/Bay/Gulf | native | 1602 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 1602 |
| Oriental | Zoogeographic realm | native | 12693 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Palearctic | Zoogeographic realm | native | 12693 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 51878 |
| Polynesian Waters | Sea/Bay/Gulf | native | 1602 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Sea of Japan | Sea/Bay/Gulf | native | 559 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 31740 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Tañon Strait | Sea/Bay/Gulf | native | 11337 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |